Feasibility of cyanobacterial inoculation for biological soil crusts formation in desert area

Practical testing of the feasibility of cyanobacterial inoculation to speed up the recovery of biological soil crusts in the field was conducted in this experiment. Results showed that cyanobacterial and algal cover climbed up to 48.5% and a total of 14 cyanobacterial and algal species were identified at the termination of inoculation experiment; biological crusts' thickness, compressive and chlorophyll a content increased with inoculation time among 3 years; moss species appeared in the second year; cyanobacterial inoculation increased organic carbon and total nitrogen of the soil; total salt, calcium carbonate and electrical conductivity in the soil also increased after inoculation. Diverse vascular plant communities composed of 10 and 9 species are established by cyanobacterial inoculation on the windward and leeward surface of the dunes, respectively, after 3 years. The Simpson index for the above two communities are 0.842 and 0.852, while the Shannon-Weiner index are 2.097 and 2.053, respectively. In conclusion, we suggest that cyanobacterial inoculation would be a suitable and effective technique to recover biological soil crusts, and may further restore the ecological system. (C) 2008 Published by Elsevier Ltd.

Effects of inoculated Microcoleus vaginatus on the structure and function of biological soil crusts of desert

Microcoleus vaginatus Gom., the dominant species in biological soil crusts (BSCs) in desert regions, plays a significant role in maintaining the BSC structure and function. The BSC quality is commonly assessed by the chlorophyll a content, thickness, and compressive strength. Here, we have studied the effect of different proportions of M. vaginatus, collected from the Gurbantunggut Desert in northwestern China, on the BSC structure and function under laboratory conditions. We found that when M. vaginatus was absent in the BSC, the BSC coverage, quantified by the percentage of BSC area to total land surface area, was low with a chlorophyll a content of 4.77 x 10(-2) mg g(-1) dry soil, a thickness of 0.86 mm, and a compressive strength of 12.21 Pa. By increasing the percentage of M. vaginatus in the BSC, the BSC coverage, chlorophyll a content, crust thickness, and compressive strength all significantly increased (P < 0.01). The maximum chlorophyll a content (13.12 mg g(-1)dry soil), the highest crust thickness, and the compressive strength (1.48 mm and 36.60 Pa, respectively) occurred when the percentage of inoculated M. vaginatus reached 80% with a complex network of filaments under scanning electron microscope. The BSC quality indicated by the above variables, however, declined when the BSC was composed of pure M. vaginatus (monoculture). In addition, we found that secretion of filaments and polymer, which stick sands together in the BSC, increased remarkably with the increase of the dominant species until the percentage of M. vaginatus reached 80%. Our results suggest that not only the dominant species but also the accompanying taxa are critical for maintaining the structure and functions of the BSC and thus the stability of the BSC ecosystems.

Cyanobacteria in biological soil crusts, Earth´s Most Extensive Biofilms: adaptation and sensitivity to global warming

School of Life Sciences, Arizona State University, Tempe AZ, USA

Assessment of physical and hydrological properties of biological soil crusts using x-ray microtomography and modelling

Biological soil crusts (BSCs) are formed by aggregates of soil particles and communities of microbial organisms and are common in all drylands. The role of BSCs on infiltration remains uncertain due to the lack of data on their role in affecting soil physical properties such as porosity and structure. Quantitative assessment of these properties is primarily hindered by the fragile nature of the crusts. Here we show how the use of a combination of non-destructive imaging X-ray microtomography (XMT) and Lattice Boltzmann method (LBM) enables quantification of key soil physical parameters and the modeling of water flow through BSCs samples from Kalahari Sands, Botswana. We quantify porosity and flow changes as a result of mechanical disturbance of such a fragile cyanobacteria-dominated crust. Results show significant variations in porosity between different types of crusts and how they affect the flow and that disturbance of a cyanobacteria-dominated crust results in the breakdown of larger pore spaces and reduces flow rates through the surface layer. We conclude that the XMT–LBM approach is well suited for study of fragile surface crust samples where physical and hydraulic properties cannot be easily quantified using conventional methods.

(Table 1) Geographical location and nutrient composition of saline lake sediments (SLS) and nearby adjacent biological soil crusts (BSC) identified as potential dust sources

While microbial communities of aerosols have been examined, little is known about their sources. Nutrient composition and microbial communities of potential dust sources, saline lake sediments (SLS) and adjacent biological soil crusts (BSC), from Southern Australia were determined and compared with a previously analyzed dust sample. Multivariate analyses of fingerprinting profiles indicated that the bacterial communities of SLS and BSC were different, and these differences were mainly explained by salinity. Nutrient concentrations varied among the sites but could not explain the differences in microbial diversity patterns. Comparison of microbial communities with dust samples showed that deflation selects against filamentous cyanobacteria, such as the Nostocales group. This could be attributed to the firm attachment of cyanobacterial filaments to soil particles and/or because deflation occurs mainly in disturbed BSC, where cyanobacterial diversity is often low. Other bacterial groups, such as Actinobacteria and the spore-forming Firmicutes, were found in both dust and its sources. While Firmicutes-related sequences were mostly detected in the SLS bacterial communities (10% of total sequences), the actinobacterial sequences were retrieved from both (11-13%). In conclusion, the potential dust sources examined here show highly diverse bacterial communities and contain nutrients that can be transported with aerosols. The obtained fingerprinting and sequencing data may enable back tracking of dust plumes and their microorganisms.

Photosynthetic pigments in soils from northern Victoria Land (continental Antarctica) as proxies for soil algal community structure and function

Although soil algae are among the main primary producers in most terrestrial ecosystems of continental Antarctica, there are very few quantitative studies on their relative proportion in the main algal groups and on how their distribution is affected by biotic and abiotic factors. Such knowledge is essential for understanding the functioning of Antarctic terrestrial ecosystems. We therefore analyzed biological soil crusts from northern Victoria Land to determine their pH, electrical conductivity (EC) water content (W), total and organic C (TC and TOC) and total N (TN) contents, and the presence and abundance of photosynthetic pigments. In particular, the latter were tested as proxies for biomass and coarse-resolution community structure. Soil samples were collected from five sites with known soil algal communities and the distribution of pigments was shown to reflect differences in the relative proportions of Chlorophyta, Cyanophyta and Bacillariophyta in these sites. Multivariate and univariate models strongly indicated that almost all soil variables (EC, W, TOC and TN) were important environmental correlates of pigment distribution. However, a significant amount of variation is independent of these soil variables and may be ascribed to local variability such as changes in microclimate at varying spatial and temporal scales. There are at least five possible sources of local variation: pigment preservation, temporal variations in water availability, temporal and spatial interactions among environmental and biological components, the local-scale patchiness of organism distribution, and biotic interactions. (C) 2009 Elsevier Ltd. All rights reserved.

A preliminary study of bryophytes and invertebrates of soil crusts in the Little Desert National Park and surrounds

This study is preliminary to ongoing investigations of soil crusts and associated invertebrates in north-west Victoria, focusing on the Little Desert National Park. Ninety quadrats from nine sites were sampled. Eighteen bryophyte species (nine mosses, nine liverworts) were identified within the quadrats. All invertebrates were from the Phylum Arthropoda. Overall abundance and diversity of invertebrates was low. While sampling in the drier months is valuable for observing the dynamics of soil crusts in this region, a more comprehensive assessment of species diversity is gained by sampling
during wetter periods.

Combined effect of soil bund with biological soil and water conservation measures in the northwestern Ethiopian highlands

Excessive runoff and soil erosion in the upper Blue Nile Basin poses a threat that has attracted the attention of the Ethiopian government because of the serious on-site effects in addition to downstream effects, such as the siltation of water harvesting structures and reservoirs. The objective of the study was to evaluate and recommend effective biophysical soil and water conservation measure(s) in the Debre Mewi watershed, about 30 km south of the Lake Tana. Six conservation measures were evaluated for their effects on runoff, soil loss, and forage yield using runoff plots. There was a significant difference between treatments for both runoff and soil loss. The four-year average annual soil loss in the different plots ranged from 26 to 71 t ha−1, and total runoff ranged from 180 to 302 mm, while annual rainfall varied between 854 mm in 2008 and 1247 mm in 2011. Soil bund combined with elephant grass had the lowest runoff and soil loss as compared to the other treatments, whereas the untreated control plot had the highest for both parameters. As an additional benefit, 2.8 and 0.7 t ha−1 year−1 of dried forage was obtained from elephant and local grasses, respectively. Furthermore, it was found that soil bund combined with Tephrosia increased soil organic matter by 13% compared to the control plot. Soil bund efficiency was significantly enhanced by combining them with biological measures and improved farmers’ perception of soil and water conservation measures.

Soil aggregate formation /

Mode of access: Internet.

Bacterial communities of the specialty crop phyllosphere: response to biological soil amendment use, rainfall, and insect visitation

Microorganisms in the plant rhizosphere, the zone under the influence of roots, and phyllosphere, the aboveground plant habitat, exert a strong influence on plant growth, health, and protection. Tomatoes and cucumbers are important players in produce safety, and the microbial life on their surfaces may contribute to their fitness as hosts for foodborne pathogens such as Salmonella enterica and Listeria monocytogenes. External factors such as agricultural inputs and environmental conditions likely also play a major role. However, the relative contributions of the various factors at play concerning the plant surface microbiome remain obscure, although this knowledge could be applied to crop protection from plant and human pathogens. Recent advances in genomic technology have made investigations into the diversity and structure of microbial communities possible in many systems and at multiple scales. Using Illumina sequencing to profile particular regions of the 16S rRNA gene, this study investigates the influences of climate and crop management practices on the field-grown tomato and cucumber microbiome. The first research chapter (Chapter 3) involved application of 4 different soil amendments to a tomato field and profiling of harvest-time phyllosphere and rhizosphere microbial communities. Factors such as water activity, soil texture, and field location influenced microbial community structure more than soil amendment use, indicating that field conditions may exert more influence on the tomato microbiome than certain agricultural inputs. In Chapter 4, the impact of rain on tomato and cucumber-associated microbial community structures was evaluated. Shifts in bacterial community composition and structure were recorded immediately following rain events, an effect which was partially reversed after 4 days and was strongest on cucumber fruit surfaces. Chapter 5 focused on the contribution of insect visitors to the tomato microbiota, finding that insects introduced diverse bacterial taxa to the blossom and green tomato fruit microbiome. This study advances our understanding of the factors that influence the microbiomes of tomato and cucumber. Farms are complex environments, and untangling the interactions between farming practices, the environment, and microbial diversity will help us develop a comprehensive understanding of how microbial life, including foodborne pathogens, may be influenced by agricultural conditions.

内蒙古草原中生物土壤结皮生态学研究

1. 生物土壤结皮是干旱半干旱生态系统中的重要组成部分，它可通过增加土壤肥力和稳定性、影响水分再分配和植物萌发、成活、生长和繁殖而对生态系统结构和功能产生重要影响。为阐明生物结皮在内蒙古草地中的作用，本报告对两个草地生态系统进行了为期三年的调查，对生物结皮的氮素输入、对放牧的响应及其与植物的关系进行了综合研究。 2. 利用乙炔还原法，本研究对内蒙古退化草地中的生物土壤结皮中的蓝藻、地衣和地耳的氮素输入进行了为期30个月的连续测定。研究发现：1) 生物结皮固氮活性主要集中于5-10月，呈单峰型曲线，表明生物土壤结皮的固氮作用主要受温度和降雨影响;2) 生物结皮年固氮量为12.99-129.9 kg N•ha-1，98%的氮素固定于6-9月份;3) 按固氮量排序，蓝藻 (61%) > 地衣 (33%) > 地耳 (6%)，表明物种组成和丰度对生物结皮的氮素输入具重要影响。生物结皮的固氮量和季节变化表明生物结皮可以是影响退化草地中植物生长和促进退化草地恢复的重要影响因子。 3. 本研究选择三个放牧处理（长期放牧、短期围封和近期放牧）对生物结皮固氮活性进行了为期3年的研究。结果表明，与短期围封相比，长期放牧造成生物土壤结皮固氮活性下降了99.5%。固氮活性在放牧时间不足11个月时即可下降至最低水平，因此，放牧持续时间短于4个月的轮牧可能有利于生物土壤结皮的固氮。 4. 本研究选择6个放牧梯度（对照：0.00 羊/公顷, 极轻度放牧：1.33羊/公顷，轻度放牧：2.67羊/公顷，中度放牧：4.00羊/公顷，重度放牧：5.33羊/公顷，极重度放牧：6.67羊/公顷)，研究放牧强度对于生物结皮丰度、物种组成和固氮输入的影响。不同放牧强度对生物结皮丰度、物种组成和固氮输入具有重要影响，表明长期放牧可抑制生物土壤结皮在氮素输入和土壤固定方面的作用。极轻度放牧对生物土壤结皮影响不大;轻度放牧造成氮素输入降低了50%;重度和极重度放牧造成氮素输入降低了90%，并可使移动性较强的物种成为生物土壤结皮的优势组分，从而可抑制其土壤固定作用。因此，极轻度和轻度放牧是有利于生物土壤结皮固氮和固定土壤的草地利用方式。 5. 在处于恢复早期的一个退化草地中，我们对生物结皮和植物之间的关系进行了为期2年的研究。结果表明，生物结皮的丰度和物种组成与植物地上生物量和盖度高度相关。生物结皮丰度和氮素输入随植物生物量和盖度下降。结果还表明生物结皮是退化草地的主要氮素输入来源，尤其是在草地恢复初期。植物组织δ15N 低于土壤，这种差异随植物生产力增高而减小，表明生物结皮所固定氮素首先被植物利用，而后返回土壤。生物结皮的固氮输入变化可能是这种变化模式的主要原因，在分解作用和氮素损失中的同位素分馏，以及菌根真菌对于氮素的转运可能也是这种变化模式的原因。结果还显示生物土壤结皮与植物之间可能存在负反馈关系。这种自我调节的反馈过程可能是影响退化草地生态系统生产力和氮素循环的重要调节机制。

Ultraviolet-B exposure induces photo-oxidative damage and subsequent repair strategies in a desert cyanobacterium Microcoleus vaginatus Gom.

Biological soil crusts are important in reversing desertification. Ultraviolet radiation, however, may be detrimental for the development of soil crusts. The cyanobacterium Microcoleus vaginatus can be a dominant species occurring in desert soil crusts all over the world. To investigate the physico-chemical consequences of ultraviolet-B radiation on M. vaginatus, eight parameters including the contents of chlorophyll a, reactive oxygen species, malondialdehyde and proline, as well as the activities of photosynthesis, superoxide dismutase (EC 1.15.1.1), peroxiclase (EC 1.11.1.7) and catalase (EC 1.11.1.6) were determined. As shown by the results of determinations, ultraviolet-B radiation caused decreases both in contents of chlorophyll a and in ratios of variable fluorescence over maximum fluorescence that indicate the growth and photosynthesis of M. vaginatus, besides, increases both in levels of reactive oxygen species and in contents of malondialdehyde and proline, while intensified activities of superoxide dismutase, peroxiclase and catalase reflecting the abilities of enzymatic preventive substances to oxidative stress of the treated cells. Therefore, ultraviolet-B radiation affects the growth of M. vaginatus and leads to oxidative stress in cells. Under ultraviolet-B radiation, the treated cells can improve their antioxidant abilities to alleviate oxidative injury. The change trends of reactive oxygen species, superoxide dismutase, peroxiclase and catalase are synchronous. These results suggest that a balance between the antioxidant system and the reactive oxygen species content may be one part of a complex stress response pathway in which multiple environmental factors including ultraviolet-B radiation affect the Survival of M. vaginatus. (C) 2009 Elsevier Masson SAS. All rights reserved.

黄土丘陵区藓结皮生物量测定方法及其随发育年限的变化

通过野外调查黄土丘陵区不同发育年限退耕地上藓结皮发育状况,结合室内测定,提出了藓类植物生物量测定的回归方程法.运用该方法测定了研究区9个不同发育年限藓类植物的生物量,并分析了其随发育年限的变化趋势.结果表明,研究区藓类植物个体微小,株高相同的藓类植物生物量变异很小,不同株高的藓类植物的株数与其生物量之间呈显著的线性相关关系(R2>0.96,n=7).因此,可以利用藓类植物株数与生物量之间的统计回归关系式估测生物结皮中藓类植物的生物量.用所建立的回归方程估测的研究区不同年限退耕地藓类植物生物量的绝对误差为1.3%～27.3%.研究区藓类植物生物量随结皮发育年限而变化,在退耕的前11年里,藓类植物生物量随发育年限的延长而增加,至11年时藓类植物生物量达到最大值(303.8g/m2),此后藓类植物生物量变化不大甚至还有下降趋势.